2023

  • Narayan G, Sen P, Nagotu S, Thummer RP (2023) Biological activity of recombinant human PDX1 protein produced from Escherichia coli. J Biochem Mol Toxicol (Wiley); 37(12): e23511, https://doi.org/10.1002/jbt.23511 (IF: 3.600)
  • Narayan G, Agrawal A, Sen P, Nagotu S, Thummer RP (2023) Production of bioactive human PAX4 protein from E. coli. The Protein Journal (Springer Nature), 42, 766–777, https://doi.org/10.1007/s10930-023-10143-3 (IF: 3.000)
  • Khyati R, Joshi G, Modak K, Premkumar C, Priyanka S, Rajesh P, Velayudhan SR, Thummer RP (2023) Generation and characterization of induced Pluripotent Stem Cell line IITGi001-A derived from adult human primary dermal fibroblasts. Stem Cell Research; 71:103159, https://doi.org/10.1016/j.scr.2023.103159 (IF: 1.200)
  • Haridhasapavalan KK, Sundaravadivelu PK, Voorkara U, Kaveeshwar V, Thummer RP (2023) Generation of recombinant version of a bioactive human MEF2C transcription factor from _E. coli_. In: Pandey, L.M., Gupta, R., Thummer, R.P., Kar, R.K. (eds) Healthcare Research and Related Technologies. NERC 2022. Springer Nature. https://doi.org/10.1007/978-981-99-4056-1_1, ISBN: 978-981-99-4055-4
  • Dey C, Raina R, Thummer RP (2023) Production of a bioactive recombinant human UTF1 protein from E. coli. In: Pandey, L.M., Gupta, R., Thummer, R.P., Kar, R.K. (eds) Healthcare Research and Related Technologies. NERC 2022. Springer Nature. https://doi.org/10.1007/978-981-99-4056-1_4, ISBN: 978-981-99-4055-4
  • Thool M, Sudhagar S, Thummer RP (2023) Soluble Expression and Purification of Biologically Active Human NANOG from Escherichia coli. In: Pandey, L.M., Gupta, R., Thummer, R.P., Kar, R.K. (eds) Healthcare Research and Related Technologies. NERC 2022. Springer Nature. https://doi.org/10.1007/978-981-99-4056-1_6, ISBN: 978-981-99-4055-4
  • Narayan G, Nagotu S, Thummer RP (2023) Heterologous Expression, Purification, and Biological Activity Determination of Codon-Optimized Human MAFA Transcription Factor from E. coli. In: Pandey, L.M., Gupta, R., Thummer, R.P., Kar, R.K. (eds) Healthcare Research and Related Technologies. NERC 2022. Springer Nature, Singapore. https://doi.org/10.1007/978-981-99-4056-1_9, ISBN: 978-981-99-4055-4

    • 2022

  • Subhendu SS, Bora A, Golder A, Raina K, Haridhasapavalan KK, Thummer RP (2022) Gelatin-PVA-AgNPs triad composite as wound healing hydrogel with wounded skin surface protective efficiency, SSRN Electronic Journal (Elsevier), http://dx.doi.org/10.2139/ssrn.4219683
  • Haridhasapavalan KK, Sundaravadivelu PK, Joshi N, Das NJ, Mohapatra A, Voorkara U, Kaveeshwar V*, Thummer RP* (2022) Generation of a recombinant version of a biologically active cell-permeant human HAND2 transcription factor from E. coli. Scientific Reports 12, 16129 (Springer Nature), https://doi.org/10.1038/s41598-022-19745-w * Equal contribution (IF: 4.996)
  • Haridhasapavalan KK, Das NJ, Thummer RP (2022) Generation of a transducible version of a bioactive recombinant human TBX5 transcription factor from E. coli. Current Research in Biotechnology, 4: 66-77 (Elsevier), https://doi.org/10.1016/j.crbiot.2022.01.004 (IF: N/A)
  • Bhattacherjee D, Raina K, Mandal TK, Thummer RP$, Bhabak KP$ (2022) Targeting Wnt/β-catenin signaling pathway in triple-negative breast cancer by benzylic organotrisulfides: Contribution of the released hydrogen sulfide towards potent anti-cancer activity. Free Radical Biology and Medicine (Elsevier), https://doi.org/10.1016/j.freeradbiomed.2022.08.029 $ Corresponding authors (IF: 8.101)

    • 2021

  • Narayan G, Agrawal A, Gogoi R, Nagotu S, Thummer RP (2021) Protein production and purification of a codon-optimized human NGN3 transcription factor from E. coli. The Protein Journal 40(6), 891-906, (Springer Nature), https://doi.org/10.1007/s10930-021-10020-x (IF: 4000)
  • Dey C, Venkatesan V, Thummer RP (2021) Identification of optimal expression parameters and purification of a codon-optimized human GLIS1 transcription factor from Escherichia coli. Molecular Biotechnology 64, 42–56 (Springer Nature), https://doi.org/10.1007/s12033-021-00390-z (IF: 2.860)
  • Haridhasapavalan KK, Das NJ, Thummer RP (2021) Generation of a transducible version of a bioactive recombinant human TBX5 transcription factor from E. coli. bioRxiv, https://doi.org/10.1101/2021.09.04.458986 (IF: N/A)
  • Dey C*, Thool M*, Bhattacharyya S, Sudhagar S, Thummer RP (2021) Generation of biologically active recombinant human OCT4 protein from E. coli. 3 Biotech, 11(5): 207. (Springer Nature), *Equal contribution. https://doi.org/10.1007/s13205-021-02758-z (IF: 2.893)
  • Haridhasapavalan KK, Harsh Ranjan S, Bhattacharyya S, Thummer RP (2021) Soluble expression, purification, and secondary structure determination of human MESP1 transcription factor. Applied Microbiology and Biotechnology, 105(6): 2363-2376 (Springer Nature), https://doi.org/10.1007/s00253-021-11194-1 (IF: 5.560)
  • Thool M*, Dey C*, Sudhagar S, Thummer RP (2021) Generation of a recombinant stem cell-specific human SOX2 protein from Escherichia coli under native conditions. Molecular Biotechnology, 63(4): 327-338 (Springer Nature), *Equal contribution. https://doi.org/10.1007/s12033-021-00305-y (IF: 2.860)
  • Haridhasapavalan KK, Sundaravadivelu PK, Bhattacharyya S, Harsh Ranjan S, Raina K, Thummer RP (2021) Generation of cell-permeant recombinant human transcription factor GATA4 from E. coli. Bioprocess and Biosystems Engineering, 44(6): 1131-1146 (Springer Nature), https://doi.org/10.1007/s00449-021-02516-8 (IF: 3.434)
  • Narayan G, Sundaravadivelu PK, Agrawal A, Gogoi R, Nagotu S, Thummer RP (2021) Soluble expression, purification, and secondary structure determination of human PDX1 transcription factor. Protein Expression and Purification, 180: 105807 (Elsevier), https://doi.org/10.1016/j.pep.2020.105807 (IF: 2.025)

    • 2020

  • Haridhasapavalan KK*, Sundaravadivelu PK*, Thummer RP (2020) Codon optimization, cloning, expression, purification, and secondary structure determination of human ETS2 transcription factor. Molecular Biotechnology, 62(10): 485-494 (Springer Nature), *Equal contribution. https://doi.org/10.1007/s12033-020-00266-8 (IF: 2.860)
  • Dey S, Patel A, Raina K, Pradhan N, Biswas O, Thummer RP$, Manna D$ (2020) Stimuli-responsive anticancer drug delivery system with inherent antibacterial activities. Chemical Communications, 56(11): 1661-1664 (Royal Society of Chemistry), https://doi.org/10.1039/c9cc08834b $ Corresponding authors (IF: 6.065)

    • 2016

  • Munst B*, Thier MC*, Winnemoller D*, Helfen M, Thummer RP$, Edenhofer F$ (2016) Nanog induces suppression of senescence through downregulation of p27KIP1 expression. Journal of Cell Science 129(5): 912-920 (The Company of Biologists (United Kingdom)), https://doi.org/10.1242/jcs.167932 $ Corresponding authors (IF: 5.235)

    • 2014

  • Peitz M*, Munst B*, Thummer RP*, Helfen M, Edenhofer F (2014) Cell-permeant recombinant Nanog protein promotes pluripotency by inhibiting endodermal specification. Stem Cell Research 12(3): 680-689 (Elsevier), *Equal contribution. https://doi.org/10.1016/j.scr.2014.02.006 (IF: 1.587)
  • Kadari A, Lu M, Li M, Thileepan S, Thummer RP, Guyette N, Chu V, Edenhofer F (2014) Excision of a viral reprogramming cassette by Cre protein transduction enables rapid and efficient derivation of transgene-free human induced pluripotent stem cells. Stem Cell Research and Therapy 5(2): 1-10 (BioMed Central Ltd; Part of Springer Nature), https://doi.org/10.1186/scrt435 (IF: 8.079)

    • 2013

  • Sekaran T*, Thummer RP*, Edenhofer F (2013) Exploring the neural reprogrammome using bioinformatics approaches. Journal of Stem Cell Research and Therapy 3(3): 1-6 (Longdom), *Equal contribution. http://dx.doi.org/10.4172/2157-7633.1000146

    • 2012

  • Thummer RP, Drenth-Diephuis LJ, Eggen BJ (2012) Constitutive UTF1 expression interferes with ES and EC cell differentiation. Journal of Stem Cell Research and Therapy 2(4): 1-7 (Longdom), http://dx.doi.org/10.4172/2157-7633.1000127

    • 2010

  • Thummer RP, Drenth-Diephuis LJ, Carney KE, Eggen BJ (2010) Functional characterization of single-nucleotide polymorphisms in the human undifferentiated embryonic-cell transcription factor 1 gene. DNA and Cell Biology (Mary Ann Liebert, Inc.) 29(5): 241-248, https://doi.org/10.1089/dna.2009.0981 (IF: 3.550)
  • Kooistra SM*, van den Boom V*, Thummer RP, Johannes F, Wardenaar R, Tesson BM, Veenhoff LM, Fusetti F, O'Neill LP, Turner BM, de Haan G, Eggen BJ (2010) UTF1 regulates ESC chromatin organization and gene expression. Stem Cells 28(10): 1703-1714 (Wiley), *Equal contribution. https://doi.org/10.1002/stem.497 (IF: 5.845)

    • 2009

  • Kooistra SM, Thummer RP, Eggen BJ (2009) Characterization of human UTF1, a chromatin-associated protein with repressor activity expressed in pluripotent cells. Stem Cell Research 2(3): 211-218 (Elsevier), https://doi.org/10.1016/j.scr.2009.02.001 (IF: 1.587)

    • 2005

  • Thummer RP, Campbell MP, Dean MK, Frusher MJ, Scott PD, Reynolds CA (2005) Entropy and Oligomerization in GPCRs. Journal of Molecular Neuroscience 26(2-3): 113-122 (Springer Nature), https://doi.org/10.1385/jmn:26:2-3:113 (IF: 2.866)

    • Other Research Articles (in collaboration)

  • Sarkar T, Ghosh S, Sundaravadivelu PK, Pandit G, Debnath S, Thummer RP, Satpati P, Chatterjee S (2024) Mechanism of protease resistance of D-amino acid residue containing cationic antimicrobial heptapeptides. ACS Infectious Diseases (ACS Publications), 10, 2, 562–581, https://doi.org/10.1021/acsinfecdis.3c00491 (IF: 4.870)
  • Chetia M, Sarkar T, Yadav M, Dey C, Sundaravadivelu PK, Thummer RP, Chatterjee S (2024) Tuning of hydrophobic-hydrophilic balance for the development of a salt-tolerant and protease-resistant lipopeptide AMP. New Journal of Chemistry (Royal Society of Chemistry), 48, 2764-2777, https://doi.org/10.1039/d3nj04815b (IF: 3.300)
  • Chaudhari H, Kulkarni R, Sundaravadivelu PK, Thummer RP, Bhuyan MK (2024) Dimensionality reduction technique based phase aberration compensation and spurious fringe removal in off-axis digital holographic microscopy. Optics and Lasers in Engineering (Elsevier), 107853, https://doi.org/10.1016/j.optlaseng.2023.107853 (IF: 4.600)
  • Chaudhari H, Kulkarni R, Sundaravadivelu PK, Thummer RP, Bhuyan MK (2024) Digital hologram reconstruction algorithm based on Fractional Fourier transform in non-telecentric digital holographic microscopy. Optics Letters (Optica Publishing Group), 49(2), 182-185, https://doi.org/10.1364/OL.504723 (IF: 3.600)
  • Deori NM, Infant T, Thummer RP, Nagotu S (2022) Characterization of the multiple domains of Pex30 involved in subcellular localization of the protein and regulation of peroxisome number. Cell Biochemistry and Biophysics (Springer Nature), https://doi.org/10.1007/s12013-022-01122-z (IF: 2.989)
  • Abu S, Bhattacherjee D, Pallavi B, Thummer RP, Bhabak KP (2022) Stimuli-responsive prodrug of non-steroidal anti-inflammatory drug diclofenac: self-immolative drug release with turn-on near-infrared fluorescence. Chemical Communications (Royal Society of Chemistry), https://doi.org/10.1039/d2cc02132c (IF: 6.065)
  • Banerjee K, Bhattacherjee D, Raina K, Thummer RP, Bhabak KP (2022) Benzimidazole-based ionic and non-ionic organoselenium compounds: Innovative synthetic strategies, structural characterizations and preliminary anti-proliferative activities. New Journal of Chemistry (Royal Society of Chemistry), https://doi.org/10.1039/d2nj01322c (IF: 3.925)
  • Deori NM, Infant T, Sundaravadivelu PK, Thummer RP, Nagotu S (2022) Pex30 undergoes phosphorylation and regulates peroxisome number in Saccharomyces cerevisiae. Molecular Genomics and Genetics, 297: 573–590 (Springer Nature), https://doi.org/10.1007/s00438-022-01872-8 (IF: 2.980)
  • $ Corresponding authors.
  • * These authors have contributed equally to this manuscript.
  •     Impact factor (IF) based on year 2023 (Clarivate Analytics).

    2023

  • Ronima KR, Dey C, Thummer RP (2023) An insight into the role of GLIS1 in embryonic development, iPSC generation and cancer. Sub-series: Cell Biology and Translational Medicine. Series: Advances in Experimental Medicine and Biology (Springer Nature), (IF: 3.650)
  • Narayan G, Ronima KR, Agrawal A, Thummer RP (2023) An insight into vital genes responsible for β-cell formation. Sub-series: Cell Biology and Translational Medicine. Series: Advances in Experimental Medicine and Biology (Springer Nature), (IF: 3.650)
  • Haridhasapavalan KK, Borthakur A, Thummer RP (2023) Direct cardiac reprogramming: Current status and future prospects. Sub-series: Cell Biology and Translational Medicine. Series: Advances in Experimental Medicine and Biology (Springer Nature), (IF: 3.650)
  • Mehak, Thummer RP, Pandey, LM (2023) Surface modified iron-oxide based engineered nanomaterials for hyperthermia therapy of cancer cells. Biotechnology and Genetic Engineering Reviews (Taylor & Francis), (IF: 4.200).
  • Narayan G, Ronima KR, Thummer RP (2023) Direct reprogramming of somatic cells into induced β-cells: An Overview. Sub-series: Cell Biology and Translational Medicine. Series: Advances in Experimental Medicine and Biology (Springer Nature), (IF: 3.650)
  • Thummer RP, Kaveeshwar V, Nayanabhirama U (2023) Induced pluripotent stem cell biobanking: A future perspective for regenerative and personalized medicine. Bio Banking for Affordable Healthcare Practices and Research. Manipal University Press. ISBN: 978-8195573028. Invited Book Chapter.

    • 2022

  • Sen T, Thummer RP (2022) CRISPR and iPSCs: Recent developments and future perspectives in neurodegenerative disease modelling, research and therapeutics. Neurotoxicity Research (Springer Nature), (IF: 3.978)
  • Sen T, Thummer RP (2022) The impact of human microbiotas in hematopoietic stem cell and organ transplantation. Frontiers in Immunology; Section: Microbial Immunology (Frontiers), (IF: 8.786)
  • Thool M, Sundaravadivelu PK, Sudhagar S, Thummer RP (2022) A comprehensive review on the role of ZSCAN4 in embryonic development, stem cells, and cancer. Stem Cell Reviews and Reports 18, 2740–2756 (Springer Nature), (IF: 6.692)
  • Dey C*, Raina K*, Thool M*, Adhikari P, Haridhasapavalan KK, Sundaravadivelu PK, Venkatesan V, Gogoi R, Sudhagar S, Thummer RP (2022) Auxiliary pluripotency-associated genes and their contributions in the generation of induced pluripotent stem cells. Molecular Players in iPSC Technology, Volume 12. Elsevier: Academic Press. ISBN: 9780323900591; 29-94. *Equal contribution, Invited Book Chapter.

    • 2021

  • Sundaravadivelu PK, Raina K, Thool M, Ray A, Joshi JM, Kaveeshwar V, Sudhagar S, Lenka N, Thummer RP (2021) Tissue-restricted stem cells as starting cell source for efficient generation of pluripotent stem cells: An overview. In: Turksen K. (eds) Cell Biology and Translational Medicine, Volume 15. Advances in Experimental Medicine and Biology (Springer Nature), (IF: 3.650)
  • Ray A*, Joshi JM*, Sundaravadivelu PK*, Raina K, Lenka N, Kaveeshwar V, Thummer RP (2021) An overview on promising somatic cell sources utilized for the efficient generation of induced pluripotent stem cells. Stem Cell Reviews and Reports. 17, 1954–1974. (Springer Nature), *Equal contribution, (IF: 6.692)
  • Agrawal A*, Narayan G*, Gogoi R, Thummer RP (2021) Recent advances in the generation of β-cells from induced pluripotent stem cells as a potential cure for diabetes mellitus. In: Turksen K. (eds) Cell Biology and Translational Medicine, Volume 14. Advances in Experimental Medicine and Biology (Springer Nature), *Equal contribution. (IF: 3.650)
  • Raina K, Dey C, Thool M, Sudhagar S, Thummer RP (2021) An insight into the role of UTF1 in development, stem cells, and cancer. Stem Cell Reviews and Reports, 17: 1280-1293 (Springer Nature), (IF: 6.692)
  • Dey C*, Raina K*, Haridhasapavalan KK*, Thool M*, Sundaravadivelu PK, Adhikari P, Gogoi R, Thummer RP (2021) An Overview of reprogramming approaches to derive integration-free induced pluripotent stem cells for prospective biomedical applications. Recent Advances in iPSC Technology, Volume 5 in Advances in Stem Cell Biology. Elsevier: Academic Press. ISBN: 9780128222317; 231-287 *Equal contribution, Invited Book Chapter.

    • 2020

  • Haridhasapavalan KK*, Raina K*, Dey C*, Adhikari P, Thummer RP (2020) An insight into reprogramming barriers to iPSC generation. Stem Cell Reviews and Reports, 16(1): 56-81 (Springer Nature), *Equal contribution. (IF: 6.692)

    • 2019

  • Borgohain MP*, Haridhasapavalan KK*, Dey C, Adhikari P, Thummer RP (2019) An insight into DNA-free reprogramming approaches to generate integration-free induced pluripotent stem cells for prospective biomedical applications. Stem Cell Reviews and Reports 15(2): 286-313 (Springer Nature), *Equal contribution. (IF: 6.692)
  • Haridhasapavalan KK*, Borgohain MP*, Dey C, Saha B, Narayan G, Kumar S, Thummer RP (2019) An insight into non-integrative gene delivery approaches to generate transgene-free induced pluripotent stem cells. Gene 686: 146-159 (Elsevier), *Equal contribution. (IF: 3.913)

    • 2018

  • Saha B, Krishna Kumar H, Borgohain MP, Thummer RP (2018) Prospective applications of induced pluripotent stem cells in military medicine. Medical Journal Armed Forces India 74(4): 313-320 (Elsevier), (IF: 0.50)
  • Saha B, Borgohain MP, Dey C, Thummer RP (2018) iPS cell generation: current and future challenges. Annals of Stem Cell Research and Therapy 1(2): 1007. Invited Mini Review Article.
  • Borgohain MP*, Narayan G*, Krishna Kumar H, Dey C, Thummer RP (2018) Maximizing expression and yield of human recombinant proteins from bacterial cell factories for biomedical applications. Advances in Microbial Biotechnology: Current Trends and Future Prospects. Apple Academic Press. ISBN: 9781771886673; 431-468. *Equal contribution, Invited Book Chapter.

    • 2017

  • Dey C*, Narayan G*, Krishna Kumar H*, Borgohain MP*, Lenka N, Thummer RP (2017) Cell-penetrating peptides as a tool to deliver biologically active recombinant proteins to generate transgene-free induced pluripotent stem cells. Studies on Stem Cells Research and Therapy 3(1): 006-015 (Peertechz), *Equal contribution, Invited Review Article.
  • $ Corresponding authors.
  • * These authors have contributed equally to this manuscript.
  •     Impact factor (IF) based on year 2023 (Clarivate Analytics).
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  • Pandey LM, Gupta R, Thummer RP, Kar RK (2023) Healthcare Research and Related Technologies. Proceedings of NERC 2022; Springer Nature (https://doi.org/10.1007/978-981-99-4056-1) ISBN: 978-981-99-4055-4, XXXII, 417 pages.